E(3)-equivariant graph neural networks for data-efficient and accurate interatomic potentials
Simon BatznerAlbert MusaelianLixin SunMario GeigerJonathan P. MailoaMordechai KornbluthNicola MolinariTess E. SmidtBoris Kozinsky
Introduces NequIP, an E(3)-equivariant graph neural network that learns highly accurate interatomic potentials for molecular dynamics while requiring up to three orders of magnitude less training data than existing models.
- Paper: Neural Message Passing for Quantum Chemistry, Justin Gilmer et al. (2017). It establishes the standard Message Passing Neural Network (MPNN) framework for quantum chemistry that NequIP builds upon and extends with equivariant tensor operations.
- Paper: Geometric Deep Learning: Going beyond Euclidean data, Michael M. Bronstein et al. (2016). It provides foundational principles for geometric deep learning and symmetry-aware convolutions on non-Euclidean domains.
- Paper: Interaction Networks for Learning about Objects, Relations and Physics, Peter W. Battaglia et al. (2016). It introduces relational interaction networks for physical systems that underpin modern graph-based particle and molecular dynamics modeling.
- Paper: Convolutional Networks on Graphs for Learning Molecular Fingerprints, David Duvenaud et al. (2015). It pioneers differentiable graph convolutional networks for molecular representation learning, providing essential context for molecular property prediction.
- Paper: MoleculeNet: a benchmark for molecular machine learning, Zhenqin Wu et al. (2017). It standardizes the benchmarks and quantum chemistry datasets used to validate data-efficient molecular machine learning architectures.
- Paper: How Powerful are Graph Neural Networks?, Keyulu Xu et al. (2019). It lays out the theoretical expressive limits of standard neighborhood-aggregation graph neural networks.
- Paper: Fast Graph Representation Learning with PyTorch Geometric, Matthias Fey et al. (2019). It details the PyTorch Geometric message-passing framework and CUDA infrastructure commonly used to implement geometric graph neural networks.
- Paper: E(n) Equivariant Graph Neural Networks, Victor Garcia Satorras et al. (2021). It introduces an alternative, highly efficient E(n)-equivariant graph network architecture that achieves coordinate equivariance via scalar distance updates rather than higher-order spherical tensors.
- Paper: Do Transformers Really Perform Bad for Graph Representation?, Chengxuan Ying et al. (2021). It advances 3D and graph representation learning by adapting the Transformer architecture with spatial and structural encodings for quantum chemistry tasks.
